PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024663
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 176aa    MW: 20175.5 Da    PI: 9.5093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024663genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-3295153159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk+++fprsYYrCt +gC+vkk+v+r ++d  vv++tYeg H h+
  DCAR_024663  95 LDDGYRWRKYGQKSVKNNKFPRSYYRCTNQGCNVKKQVQRLSKDDGVVVTTYEGMHSHP 153
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3381153IPR003657WRKY domain
SuperFamilySSF1182901.7E-2987154IPR003657WRKY domain
PROSITE profilePS5081130.19490155IPR003657WRKY domain
SMARTSM007748.4E-3995154IPR003657WRKY domain
PfamPF031062.1E-2696153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MFHQSPASHD QILSLNNIYD ICDDKSKQRN GSFLELMASM GGPAAAAIVS RDSSKQRRDH  60
DHPSSSGNEV DEFKEKKKSK KCRYAFQTRS QVDILDDGYR WRKYGQKSVK NNKFPRSYYR  120
CTNQGCNVKK QVQRLSKDDG VVVTTYEGMH SHPLEKSTDN FENILTQMQI YHTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-2985154776Probable WRKY transcription factor 4
2lex_A7e-2985154776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615508.12e-65PREDICTED: probable WRKY transcription factor 75
RefseqXP_016446514.12e-65PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA23e-55WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLW8E2P51e-62W8E2P5_MALBA; WRKY75
STRINGSi026859m3e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-56WRKY DNA-binding protein 75